4UDS Crystal structure of MbdR regulator from Azoarcus sp. CIB date
authors Liu, H., Liu, H.X., MacMahon, S.A., Juarez, J.F., Zamarro, M.T., Eberlein, C., Boll, M., Carmona, M., Diaz, E., Naismith, J.H.
compound source
symmetry
R_factor
R_Free 0.24948
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.76
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnraveling the Specific Regulation of the mbd Central Pathway for the Anaerobic Degradation of 3-methylbenzoate., Juarez JF, Liu H, Zamarro MT, McMahon S, Liu H, Naismith JH, Eberlein C, Boll M, Carmona M, Diaz E, J Biol Chem. 2015 Mar 20. pii: jbc.M115.637074. PMID:25795774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4uds.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4UDS
  • CSU: Contacts of Structural Units for 4UDS
  • Structure Factors (351 Kb)
  • Retrieve 4UDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UDS from S2C, [Save to disk]
  • Re-refined 4uds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UDS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UDS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uds_A] [4uds]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UDS
  • Community annotation for 4UDS at PDBWiki (http://pdbwiki.org)

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