4UDT T cell receptor (TRAV22,TRBV7-9) structure date
authors Rodstrom, K.E.J., Regenthal, P., Lindkvist-Petersson, K.
compound source
symmetry
R_factor
R_Free 0.19291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand GOL enzyme
Primary referenceStructure of Staphylococcal Enterotoxin E in Complex with TCR Defines the Role of TCR Loop Positioning in Superantigen Recognition., Rodstrom KE, Regenthal P, Lindkvist-Petersson K, PLoS One. 2015 Jul 6;10(7):e0131988. doi: 10.1371/journal.pone.0131988., eCollection 2015. PMID:26147596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4udt.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4UDT
  • CSU: Contacts of Structural Units for 4UDT
  • Structure Factors (4285 Kb)
  • Retrieve 4UDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UDT from S2C, [Save to disk]
  • Re-refined 4udt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4udt_A] [4udt_B] [4udt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UDT: [IG] [IG_like] [IGc1 ] by SMART
  • Other resources with information on 4UDT
  • Community annotation for 4UDT at PDBWiki (http://pdbwiki.org)

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