4UF6	UCH-L5 in complex with ubiquitin-propargyl bound to an activating fragment of INO80G	date
authors	Sahtoe, D.D., Dijk, W.J.Van., Oualid, F.El., Ekkebus, R., Ovaa, H., Sixma, T.K.
compound		source
symmetry		R_factor R_Free 0.26907
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.69
ligand	AYE	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G endopeptidase inhibitor acti... F, C, I, L
Primary reference	Mechanism of UCH-L5 Activation and Inhibition by DEUBAD Domains in RPN13 and INO80G., Sahtoe DD, van Dijk WJ, El Oualid F, Ekkebus R, Ovaa H, Sixma TK, Mol Cell. 2015 Feb 17. pii: S1097-2765(14)01017-X. doi:, 10.1016/j.molcel.2014.12.039. PMID:25702870

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (586 Kb) [Save to disk] Biological Unit Coordinates (4uf6.pdb1.gz) 148 Kb Biological Unit Coordinates (4uf6.pdb2.gz) 148 Kb Biological Unit Coordinates (4uf6.pdb3.gz) 145 Kb Biological Unit Coordinates (4uf6.pdb4.gz) 148 Kb LPC: Ligand-Protein Contacts for 4UF6 CSU: Contacts of Structural Units for 4UF6 Structure Factors (1148 Kb) Retrieve 4UF6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4UF6 from S2C, [Save to disk] Re-refined 4uf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4UF6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4UF6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4UF6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4uf6] [4uf6_J] [4uf6_B] [4uf6_D] [4uf6_I] [4uf6_A] [4uf6_F] [4uf6_E] [4uf6_H] [4uf6_K] [4uf6_L] [4uf6_C] [4uf6_G] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4UF6: [UBQ ] by SMART

Other resources with information on 4UF6

Community annotation for 4UF6 at PDBWiki (http://pdbwiki.org)

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