4UFR Structure of the ectodomain of LGR5 in complex with R-spondin-2 (Fu1Fu2) date
authors Zebisch, M., Jones, E.Y.
compound source
symmetry
R_factor
R_Free 0.26172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand CL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceCrystal structure of R-spondin 2 in complex with the ectodomains of its receptors LGR5 and ZNRF3., Zebisch M, Yvonne Jones E, J Struct Biol. 2015 Jun 26. pii: S1047-8477(15)00137-9. doi:, 10.1016/j.jsb.2015.05.008. PMID:26123262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (4ufr.pdb1.gz) 366 Kb
  • LPC: Ligand-Protein Contacts for 4UFR
  • CSU: Contacts of Structural Units for 4UFR
  • Structure Factors (1186 Kb)
  • Retrieve 4UFR in mmCIF format [Save to disk]
  • Re-refined 4ufr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ufr_C] [4ufr_D] [4ufr] [4ufr_B] [4ufr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UFR: [FU] [LRR] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 4UFR
  • Community annotation for 4UFR at PDBWiki (http://pdbwiki.org)

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