4UHZ Signaling Protein date Mar 27, 2015
title Crystal Structure Of The Human Rgmb-Bmp2 Complex, Crystal Fo
authors E.G.Healey, B.Bishop, J.Elegheert, C.H.Bell, S.Padilla-Parra, C.S
compound source
Molecule: Rgm Domain Family Member B
Chain: B
Fragment: N-Terminal Domain, Residues 52-137
Synonym: Drg11-Responsive Axonal Guidance And Outgrowth Of Dragon, Repulsive Guidance Molecule B, Rgmb;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec

Molecule: Bone Morphogenetic Protein 2
Chain: A
Fragment: C-Terminal Domain Signaling Domain, Residues 283-
Synonym: Bmp-2, Bone Morphogenetic Protein 2a, Bmp-2a, Bmp2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet22b
symmetry Space Group: I 21 3
R_factor 0.2050 R_Free 0.2286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.010 129.010 129.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceRepulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein., Healey EG, Bishop B, Elegheert J, Bell CH, Padilla-Parra S, Siebold C, Nat Struct Mol Biol. 2015 May 4. doi: 10.1038/nsmb.3016. PMID:25938661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (4uhz.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 4UHZ
  • CSU: Contacts of Structural Units for 4UHZ
  • Structure Factors (157 Kb)
  • Retrieve 4UHZ in mmCIF format [Save to disk]
  • Re-refined 4uhz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UHZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UHZ, from MSDmotif at EBI
  • Fold representative 4uhz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uhz_A] [4uhz_B] [4uhz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UHZ: [TGFB ] by SMART
  • Other resources with information on 4UHZ
  • Community annotation for 4UHZ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science