4UI2 Signaling Protein date Mar 27, 2015
title Crystal Structure Of The Ternary Rgmb-Bmp2-Neo1 Complex
authors E.G.Healey, B.Bishop, J.Elegheert, C.H.Bell, S.Padilla-Parra, C.S
compound source
Molecule: Neogenin
Chain: A
Fragment: 5th And 6th Fn Type 3 Like Domains
Engineered: Yes
Other_details: Chain C And Chain D Is The Result Of An Auto Cleavage Between Residues Asp168 And Pro169;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec

Molecule: Bone Morphogenetic Protein 2, Bmp2
Chain: B
Fragment: C-Terminal Domain Signaling Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet22b

Molecule: Repulsive Guidance Molecule C, Rgmc, Hemojuvelin
Chain: C
Fragment: Residues 50-168
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec

Molecule: Repulsive Guidance Molecule C, Rgmc, Hemojuvelin
Chain: D
Fragment: Residues 169-240
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.080 120.080 204.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand ACT, BMA, NAG, SRT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


D, C


Primary referenceRepulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein., Healey EG, Bishop B, Elegheert J, Bell CH, Padilla-Parra S, Siebold C, Nat Struct Mol Biol. 2015 May 4. doi: 10.1038/nsmb.3016. PMID:25938661
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (4ui2.pdb1.gz) 363 Kb
  • LPC: Ligand-Protein Contacts for 4UI2
  • CSU: Contacts of Structural Units for 4UI2
  • Structure Factors (1418 Kb)
  • Retrieve 4UI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UI2 from S2C, [Save to disk]
  • Re-refined 4ui2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UI2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UI2, from MSDmotif at EBI
  • Fold representative 4ui2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ui2_D] [4ui2_A] [4ui2_C] [4ui2] [4ui2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UI2: [FN3] [TGFB ] by SMART
  • Other resources with information on 4UI2
  • Community annotation for 4UI2 at PDBWiki (http://pdbwiki.org)

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