4UI9 Cell Cycle date Mar 27, 2015
title Atomic Structure Of The Human Anaphase-Promoting Complex
authors L.Chang, Z.Zhang, J.Yang, S.H.Mclaughlin, D.Barford
compound source
Molecule: Anaphase-Promoting Complex Subunit 1
Chain: A
Synonym: Apc1, Cyclosome Subunit 1, Mitotic Checkpoint Regu Testis-Specific Gene 24 Protein, Apc1, Cyclosome Subunit 1, Checkpoint Regulator, Testis-Specific Gene 24 Protein;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 11
Chain: B
Synonym: Apc11, Cyclosome Subunit 11, Hepatocellular Carcin Associated Ring Finger Protein, Apc11, Cyclosome Subunit 11 Hepatocellular Carcinoma- Associated Ring Finger Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Cell Division Cycle Protein 23 Homolog
Chain: C, P
Synonym: Anaphase-Promoting Complex Subunit 8, Apc8, Cyclos Subunit 8, Anaphase-Promoting Complex Subunit 8, Apc8, Cycl Subunit 8;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 15
Chain: D
Synonym: Apc15, Apc15

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 16
Chain: E
Synonym: Apc16, Cyclosome Subunit 16, Apc16, Cyclosome Subu

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Cell Division Cycle Protein 27 Homolog
Chain: F, H
Synonym: Anaphase-Promoting Complex Subunit 3, Apc3, Cdc27 Cdc27hs, H-Nuc, Anaphase-Promoting Complex Subunit 3, Apc3, Homolog, Cdc27hs, H-Nuc;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit Cdc26
Chain: G
Synonym: Anaphase-Promoting Complex Subunit 12, Apc12, Cell Cycle Protein 26 Homolog, Anaphase-Promoting Complex Subuni Apc12, Cell Division Cycle Protein 26 Homolog;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 4
Chain: I
Synonym: Apc4, Cyclosome Subunit 4, Apc4, Cyclosome Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Cell Division Cycle Protein 16 Homolog
Chain: J
Synonym: Anaphase-Promoting Complex Subunit 6, Apc6, Cdc16 Cdc16hs, Cyclosome Subunit 6, Anaphase-Promoting Complex Su Apc6, Cdc16 Homolog, Cdc16hs, Cyclosome Subunit 6;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Cell Division Cycle Protein 16 Homolog
Chain: K
Synonym: Anaphase-Promoting Complex Subunit 6, Apc6, Cdc16 Cdc16hs, Cyclosome Subunit 6, Anaphase-Promoting Complex Su Apc6, Cdc16 Homolog, Cdc16hs, Cyclosome Subunit 6;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 10
Chain: L
Synonym: Apc10, Cyclosome Subunit 10, Apc10, Cyclosome Subu

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 13
Chain: M
Synonym: Apc13, Cyclosome Subunit 13, Apc13, Cyclosome Subu

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 2
Chain: N
Synonym: Apc2, Cyclosome Subunit 2, Apc2, Cyclosome Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 5
Chain: O
Synonym: Apc5, Cyclosome Subunit 5, Apc5, Cyclosome Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fizzy-Related Protein Homolog
Chain: R
Synonym: Fzr, Cdc20-Like Protein 1, Cdh1hct1 Homolog, Hcdh Dc20-Like Protein 1, Cdh1hct1 Homolog, Hcdh1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: F-Box Only Protein 5
Chain: S
Synonym: Early Mitotic Inhibitor 1, Early Mitotic Inhibitor

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Peptide
Chain: T

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Peptide
Chain: U

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit Cdc26
Chain: W
Synonym: Anaphase-Promoting Complex Subunit 12, Apc12, Cell Cycle Protein 26 Homolog, Anaphase-Promoting Complex Subuni Apc12, Cell Division Cycle Protein 26 Homolog;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Anaphase-Promoting Complex Subunit 7
Chain: X, Y
Synonym: Apc7, Cyclosome Subunit 7, Apc7, Cyclosome Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, P


D


E


F, H


I


K, J


L


M


N


R


S


W, G


Y, X


Primary referenceAtomic structure of the APC/C and its mechanism of protein ubiquitination., Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D, Nature. 2015 Jun 25;522(7557):450-4. doi: 10.1038/nature14471. Epub 2015 Jun 15. PMID:26083744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1375 Kb) [Save to disk]
  • Biological Unit Coordinates (4ui9.pdb1.gz) 1352 Kb
  • LPC: Ligand-Protein Contacts for 4UI9
  • CSU: Contacts of Structural Units for 4UI9
  • Retrieve 4UI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UI9 from S2C, [Save to disk]
  • View 4UI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UI9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UI9, from MSDmotif at EBI
  • Fold representative 4ui9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ui9_O] [4ui9_C] [4ui9_G] [4ui9_A] [4ui9] [4ui9_W] [4ui9_E] [4ui9_U] [4ui9_N] [4ui9_P] [4ui9_D] [4ui9_M] [4ui9_R] [4ui9_K] [4ui9_Y] [4ui9_B] [4ui9_X] [4ui9_S] [4ui9_T] [4ui9_J] [4ui9_H] [4ui9_I] [4ui9_L] [4ui9_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UI9: [APC10] [APC2] [CULLIN] [IBR] [RING] [TPR] [WD40 ] by SMART
  • Other resources with information on 4UI9
  • Community annotation for 4UI9 at PDBWiki (http://pdbwiki.org)

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