4UIS Hydrolase date Apr 03, 2015
title The Cryoem Structure Of Human Gamma-Secretase Complex
authors L.Sun, L.Zhao, G.Yang, C.Yan, R.Zhou, X.Zhou, T.Xie, Y.Zhao, S.Wu, X.
compound source
Molecule: Gamma-Secretase
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s

Molecule: Gamma-Secretase
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s

Molecule: Gamma-Secretase
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s

Molecule: Gamma-Secretase
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s

Molecule: Lysozyme
Chain: G
Ec: 3.2.1.17
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Endoplasmic reticulum membrane
luminal side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


B


G


Primary referenceStructural basis of human gamma-secretase assembly., Sun L, Zhao L, Yang G, Yan C, Zhou R, Zhou X, Xie T, Zhao Y, Wu S, Li X, Shi Y, Proc Natl Acad Sci U S A. 2015 May 12;112(19):6003-8. doi:, 10.1073/pnas.1506242112. Epub 2015 Apr 27. PMID:25918421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (4uis.pdb1.gz) 231 Kb
  • CSU: Contacts of Structural Units for 4UIS
  • Retrieve 4UIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UIS from S2C, [Save to disk]
  • View 4UIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UIS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UIS, from MSDmotif at EBI
  • Fold representative 4uis from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uis_G] [4uis_B] [4uis_A] [4uis_D] [4uis] [4uis_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UIS
  • Community annotation for 4UIS at PDBWiki (http://pdbwiki.org)

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