4UIV BROMODOMAIN OF HUMAN BRD9 WITH N-(1,1-dioxo-1-thian-4-yl)-5-methyl-4- oxo-7-3-(trifluoromethyl)phenyl-4H,5H-thieno-3,2-c-pyridine-2- carboximidamide date
authors Chung, C., Theodoulou, N.T., Bamborough, P., Humphreys, P.G.
compound source
symmetry
R_factor
R_Free 0.17337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand EDO, XZB enzyme
Primary referenceThe Discovery of I-BRD9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition., Theodoulou NH, Bamborough P, Bannister AJ, Becher I, Bit RA, Che KH, Chung CW, Dittmann A, Drewes G, Drewry DH, Gordon L, Grandi P, Leveridge M, Lindon M, Michon AM, Molnar J, Robson SC, Tomkinson NC, Kouzarides T, Prinjha RK, Humphreys PG, J Med Chem. 2015 Apr 9. PMID:25856009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4uiv.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4UIV
  • CSU: Contacts of Structural Units for 4UIV
  • Structure Factors (195 Kb)
  • Retrieve 4UIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UIV from S2C, [Save to disk]
  • Re-refined 4uiv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UIV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uiv] [4uiv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UIV: [BROMO ] by SMART
    • Other resources with information on 4UIV
  • Community annotation for 4UIV at PDBWiki (http://pdbwiki.org)

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