4UM3 Signaling Protein date May 14, 2014
title Engineered Ls-Achbp With Alpha4-Alpha4 Binding Pocket In Com Ns3920
authors A.Shahsavar, J.S.Kastrup, T.Balle, M.Gajhede
compound source
Molecule: Acetylcholine Binding Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, Q, R, T X, Y, Z, A, B, C, D, E, F, G, H, I, J, K, L, M, N;
Synonym: Ach-Binding Protein, Achbp, Acetylcholine Binding
Engineered: Yes
Mutation: Yes
Other_details: 1-(6-Bromopyridin-3-Yl)-1,4-Diazepane (Ns392 At The Interface Of Each Two Monomers;
Organism_scientific: Lymnaea Stagnalis
Organism_common: Great Pond Snail
Organism_taxid: 6523
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: Acetylcholine Binding Protein
Chain: P
Synonym: Ach-Binding Protein, Achbp, Acetylcholine Binding
Engineered: Yes
Mutation: Yes
Other_details: 1-(6-Bromopyridin-3-Yl)-1,4-Diazepane (Ns392 At The Interface Of Each Two Monomers;

Organism_scientific: Lymnaea Stagnalis
Organism_common: Great Pond Snail
Organism_taxid: 6523
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: Acetylcholine Binding Protein
Chain: S
Synonym: Ach-Binding Protein, Achbp, Acetylcholine Binding
Engineered: Yes
Mutation: Yes
Other_details: 1-(6-Bromopyridin-3-Yl)-1,4-Diazepane (Ns392 At The Interface Of Each Two Monomers

Organism_scientific: Lymnaea Stagnalis
Organism_common: Great Pond Snail
Organism_taxid: 6523
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.490 145.418 234.906 90.00 101.29 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 09R, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceAChBP Engineered to Mimic the alpha4-beta4 Binding Pocket in alpha4beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity., Shahsavar A, Ahring PK, Olsen JA, Krintel C, Kastrup JS, Balle T, Gajhede M, Mol Pharmacol. 2015 Jul 15. pii: mol.115.098061. PMID:26180047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2719 Kb) [Save to disk]
  • Biological Unit Coordinates (4um3.pdb1.gz) 349 Kb
  • Biological Unit Coordinates (4um3.pdb2.gz) 346 Kb
  • Biological Unit Coordinates (4um3.pdb3.gz) 345 Kb
  • Biological Unit Coordinates (4um3.pdb4.gz) 349 Kb
  • Biological Unit Coordinates (4um3.pdb5.gz) 346 Kb
  • Biological Unit Coordinates (4um3.pdb6.gz) 346 Kb
  • Biological Unit Coordinates (4um3.pdb7.gz) 349 Kb
  • Biological Unit Coordinates (4um3.pdb8.gz) 348 Kb
  • LPC: Ligand-Protein Contacts for 4UM3
  • CSU: Contacts of Structural Units for 4UM3
  • Structure Factors (14026 Kb)
  • Retrieve 4UM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UM3 from S2C, [Save to disk]
  • Re-refined 4um3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UM3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4um3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4um3_n] [4um3_D] [4um3_M] [4um3_E] [4um3_P] [4um3_H] [4um3_W] [4um3_b] [4um3_h] [4um3_m] [4um3_S] [4um3_e] [4um3_N] [4um3_V] [4um3_K] [4um3_J] [4um3_C] [4um3_U] [4um3_B] [4um3_A] [4um3_O] [4um3_R] [4um3_X] [4um3_l] [4um3_G] [4um3_Y] [4um3_d] [4um3_Q] [4um3_L] [4um3_Z] [4um3_T] [4um3_c] [4um3_f] [4um3_a] [4um3_k] [4um3_j] [4um3_g] [4um3_I] [4um3_i] [4um3_F] [4um3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UM3
  • Community annotation for 4UM3 at PDBWiki (http://pdbwiki.org)

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