4UPM Structure of rat neuronal nitric oxide synthase heme domain in complex with N',N'-{[(2R)-3-aminopropane-1,2-diyl]bis(oxymethanediylbenzene-3,1-diyl)}dithiophene-2-carboximidamide date
authors Li, H., Poulos, T.L.
compound source
symmetry
R_factor
R_Free 0.21018
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand ACT, H4B, HEM, I5U, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCombination of chiral linkers with thiophenecarboximidamide heads to improve the selectivity of inhibitors of neuronal nitric oxide synthase., Jing Q, Li H, Roman LJ, Martasek P, Poulos TL, Silverman RB, Bioorg Med Chem Lett. 2014 Aug 12. pii: S0960-894X(14)00814-2. doi:, 10.1016/j.bmcl.2014.07.079. PMID:25149509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (4upm.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 4UPM
  • CSU: Contacts of Structural Units for 4UPM
  • Structure Factors (1146 Kb)
  • Retrieve 4UPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UPM from S2C, [Save to disk]
  • Re-refined 4upm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UPM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UPM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4upm_A] [4upm] [4upm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4UPM
  • Community annotation for 4UPM at PDBWiki (http://pdbwiki.org)

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