4UQG A new bio-isosteric base pair based on reversible bonding date
authors Tomas-Gamasa, M., Serdjukov, S., Su, M., Mueller, M., Carell, T.
compound source
symmetry
R_factor
R_Free 0.21116
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand FRU, GLC, SAY, SO4, T0T enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


    • Primary reference"Post-It" Type Connected DNA Created with a Reversible Covalent Cross-Link., Tomas-Gamasa M, Serdjukow S, Su M, Muller M, Carell T, Angew Chem Int Ed Engl. 2014 Nov 28. doi: 10.1002/anie.201407854. PMID:25446281
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4uqg.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4UQG
  • CSU: Contacts of Structural Units for 4UQG
  • Structure Factors (1188 Kb)
  • Retrieve 4UQG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UQG from S2C, [Save to disk]
  • Re-refined 4uqg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UQG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UQG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UQG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uqg_C] [4uqg] [4uqg_B] [4uqg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UQG: [35EXOc] [POLAc ] by SMART
    • Other resources with information on 4UQG
  • Community annotation for 4UQG at PDBWiki (http://pdbwiki.org)

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