4URD Cryo-EM map of Trigger Factor bound to a translating ribosome date
authors Deeng, J., Chan, K.Y., Sluis, E.van.der., Bischoff, L., Berninghausen, O., Han, W., Gumbart, J., Schulten, K., Beatrix, B., Beckmann, R.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.70

Primary referenceDynamic Behavior of Trigger Factor on the Ribosome., Deeng J, Chan KY, van der Sluis EO, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R, J Mol Biol. 2016 Jun 16. pii: S0022-2836(16)30215-7. doi:, 10.1016/j.jmb.2016.06.007. PMID:27320387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (4urd.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 4URD
  • Retrieve 4URD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4URD from S2C, [Save to disk]
  • View 4URD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4URD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4urd_A] [4urd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4URD
  • Community annotation for 4URD at PDBWiki (http://pdbwiki.org)

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