4USD Transferase date Jul 07, 2014
title Human Stk10 (Lok) With Sb-633825
authors J.M.Elkins, E.Salah, M.Szklarz, F.Von Delft, P.Canning, J.Raynor, C.Bountra, A.M.Edwards, S.Knapp
compound source
Molecule: Serinethreonine-Protein Kinase 10
Chain: A, B
Fragment: Kinase Domain, Residues 18-317
Synonym: Lymphocyte-Oriented Kinase, Stk10
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.720 99.600 151.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand R09 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceComprehensive characterization of the Published Kinase Inhibitor Set., Elkins JM, Fedele V, Szklarz M, Abdul Azeez KR, Salah E, Mikolajczyk J, Romanov S, Sepetov N, Huang XP, Roth BL, Al Haj Zen A, Fourches D, Muratov E, Tropsha A, Morris J, Teicher BA, Kunkel M, Polley E, Lackey KE, Atkinson FL, Overington JP, Bamborough P, Muller S, Price DJ, Willson TM, Drewry DH, Knapp S, Zuercher WJ, Nat Biotechnol. 2015 Oct 26. doi: 10.1038/nbt.3374. PMID:26501955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (4usd.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4usd.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4USD
  • CSU: Contacts of Structural Units for 4USD
  • Structure Factors (669 Kb)
  • Retrieve 4USD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4USD from S2C, [Save to disk]
  • Re-refined 4usd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4USD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4USD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4usd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4usd] [4usd_B] [4usd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4USD: [S_TKc ] by SMART
  • Other resources with information on 4USD
  • Community annotation for 4USD at PDBWiki (http://pdbwiki.org)

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