4UU5 Cell Adhesion date Jul 24, 2014
title Crystal Structure Of The Pdz Domain Of Pals1 In Complex With Peptide
authors M.E.Ivanova, A.G.Purkiss, N.Q.Mcdonald
compound source
Molecule: Maguk P55 Subfamily Member 5
Chain: A
Fragment: Pdz Domain, Residues 251-335
Synonym: Pals1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-2

Molecule: Protein Crumbs Homolog 1
Chain: B
Fragment: Residues 1390-1406
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-2
symmetry Space Group: P 41 2 2
R_factor 0.168 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.730 74.730 42.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.23 Å
ligand CL, NA, PUN, SME enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove., Ivanova ME, Fletcher GC, O'Reilly N, Purkiss AG, Thompson BJ, McDonald NQ, Acta Crystallogr D Biol Crystallogr. 2015 Mar 1;71(Pt 3):555-64. doi:, 10.1107/S139900471402776X. Epub 2015 Feb 26. PMID:25760605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4uu5.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 4UU5
  • CSU: Contacts of Structural Units for 4UU5
  • Structure Factors (642 Kb)
  • Retrieve 4UU5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UU5 from S2C, [Save to disk]
  • Re-refined 4uu5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UU5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UU5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UU5, from MSDmotif at EBI
  • Fold representative 4uu5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uu5_A] [4uu5] [4uu5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UU5: [PDZ ] by SMART
  • Other resources with information on 4UU5
  • Community annotation for 4UU5 at PDBWiki (http://pdbwiki.org)

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