4UUB Crystal structure of zebrafish Sirtuin 5 in complex with 2R-butyl- succinylated CPS1-peptide date
authors Pannek, M., Gertz, M., Steegborn, C.
compound source
symmetry
R_factor
R_Free 0.25387
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand BEZ, DMS, EDO, EPE, NA, SU8, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceChemical Probing of the Human Sirtuin 5 Active Site Reveals Its Substrate Acyl Specificity and Peptide-Based Inhibitors., Roessler C, Nowak T, Pannek M, Gertz M, Nguyen GT, Scharfe M, Born I, Sippl W, Steegborn C, Schutkowski M, Angew Chem Int Ed Engl. 2014 Aug 11. doi: 10.1002/anie.201402679. PMID:25111069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (4uub.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (4uub.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4UUB
  • CSU: Contacts of Structural Units for 4UUB
  • Structure Factors (151 Kb)
  • Retrieve 4UUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UUB from S2C, [Save to disk]
  • Re-refined 4uub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UUB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UUB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uub_B] [4uub] [4uub_A] [4uub_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UUB: [ZnF_C2HC ] by SMART
  • Other resources with information on 4UUB
  • Community annotation for 4UUB at PDBWiki (http://pdbwiki.org)

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