4UUV Transcription date Jul 31, 2014
title Structure Of The Dna Binding Ets Domain Of Human Etv4 In Complex With Dna
authors J.A.Newman, H.Aitkenhead, C.D.O.Cooper, L.Shrestha, N.Burgess-Br J.Kopec, F.Von Delft, C.H.Arrowsmith, C.Bountra, A.M.Edwards, O.
compound source
Molecule: Ets Translocation Variant 4
Chain: A, D, G, J, M, P, S, V
Fragment: Ets Domain, Residues 338-435
Synonym: Adenovirus E1a Enhancer-Binding Protein, E1a-F, Polyomavirus;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: 5'-D(Apcpcpgpgpapapgptpgp)-3'
Chain: B, E, H, K, N, Q, T, W

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Apcptptpcpcpgpgptpcp)-3'
Chain: C, F, I, L, O, R, U

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Apcptptpcpcpgpgptpcp)-3'
Chain: X

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.2030 R_Free 0.2480
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.651 46.133 171.150 90.00 96.69 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
S, A, J, M, D, P, G, V


Primary referenceStructures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (4uuv.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (4uuv.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4uuv.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (4uuv.pdb4.gz) 50 Kb
  • CSU: Contacts of Structural Units for 4UUV
  • Structure Factors (1669 Kb)
  • Retrieve 4UUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UUV from S2C, [Save to disk]
  • Re-refined 4uuv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UUV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UUV, from MSDmotif at EBI
  • Fold representative 4uuv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uuv_J] [4uuv_I] [4uuv_T] [4uuv_D] [4uuv_L] [4uuv_B] [4uuv_N] [4uuv_R] [4uuv_E] [4uuv_G] [4uuv_K] [4uuv_S] [4uuv_M] [4uuv_C] [4uuv_U] [4uuv] [4uuv_V] [4uuv_F] [4uuv_P] [4uuv_X] [4uuv_A] [4uuv_W] [4uuv_O] [4uuv_Q] [4uuv_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UUV: [ETS ] by SMART
  • Other resources with information on 4UUV
  • Community annotation for 4UUV at PDBWiki (http://pdbwiki.org)

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