4UX5 Transcription date Aug 19, 2014
title Structure Of Dna Complex Of Pcg2
authors J.Liu, J.Huang, Y.Zhao, H.Liu, D.Wang, J.Yang, W.Zhao, I.A.Taylor, Y
compound source
Molecule: Transcription Factor Mbp1
Chain: A, B
Fragment: Dna Binding Domain, Residues 1-138
Synonym: Pcg2
Organism_scientific: Magnaporthe Oryzae
Organism_common: Rice Blast Fungus
Organism_taxid: 318829

Molecule: 5'-D(Cpapaptpgpapcpgpcpgptpapapgp)-
Chain: C
Synonym: Mcb Box Dna

Synthetic: Yes
Organism_scientific: Candida Albicans
Organism_taxid: 5476

Molecule: 5'-D(Cptptpapcpgpcpgptpcpaptptpgp)-
Chain: D
Synonym: Mcb Box Dna

Synthetic: Yes
Organism_scientific: Candida Albicans
Organism_taxid: 5476
symmetry Space Group: P 4 21 2
R_factor 0.2283 R_Free 0.2576
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.360 117.360 65.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of DNA recognition by PCG2 reveals a novel DNA binding mode for winged helix-turn-helix domains., Liu J, Huang J, Zhao Y, Liu H, Wang D, Yang J, Zhao W, Taylor IA, Peng YL, Nucleic Acids Res. 2014 Dec 29. pii: gku1351. PMID:25550425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4ux5.pdb1.gz) 103 Kb
  • CSU: Contacts of Structural Units for 4UX5
  • Structure Factors (597 Kb)
  • Retrieve 4UX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UX5 from S2C, [Save to disk]
  • Re-refined 4ux5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UX5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UX5, from MSDmotif at EBI
  • Fold representative 4ux5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ux5_D] [4ux5_B] [4ux5] [4ux5_A] [4ux5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UX5: [KilA-N ] by SMART
  • Other resources with information on 4UX5
  • Community annotation for 4UX5 at PDBWiki (http://pdbwiki.org)

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