4UXO Transport Protein date Aug 27, 2014
title Conserved Mechanisms Of Microtubule-Stimulated Adp Release, Binding, And Force Generation In Transport Kinesins
authors J.Atherton, I.Farabella, I.M.Yu, S.S.Rosenfeld, A.Houdusse, M.Top C.Moores
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A
Synonym: Alpha-Tubulin Ubiquitous
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Tubulin Beta-2b Chain
Chain: B

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Kinesin-3 Motor Domain
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.30 Å
ligand GDP, GTP, MG, TA1, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceConserved mechanisms of microtubule-stimulated ADP release, ATP binding, and force generation in transport kinesins., Atherton J, Farabella I, Yu IM, Rosenfeld SS, Houdusse A, Topf M, Moores CA, Elife. 2014 Sep 10:e03680. doi: 10.7554/eLife.03680. PMID:25209998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (4uxo.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 4UXO
  • CSU: Contacts of Structural Units for 4UXO
  • Retrieve 4UXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UXO from S2C, [Save to disk]
  • View 4UXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UXO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UXO, from MSDmotif at EBI
  • Fold representative 4uxo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uxo] [4uxo_B] [4uxo_C] [4uxo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UXO: [KISc] [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 4UXO
  • Community annotation for 4UXO at PDBWiki (http://pdbwiki.org)

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