4UYE BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-dimethyl-2-oxo-6-(piperidin-1- yl)-2,3-dihydro-1H-1,3-benzodiazol-5-yl-2-methoxybenzamide date
authors Chung, C., Bamborough, P., Demont, E.
compound source
symmetry
R_factor
R_Free 0.20113
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand 9F9, EDO enzyme
Primary reference1,3-Dimethyl Benzimidazolones Are Potent, Selective Inhibitors of the BRPF1 Bromodomain., Demont EH, Bamborough P, Chung CW, Craggs PD, Fallon D, Gordon LJ, Grandi P, Hobbs CI, Hussain J, Jones EJ, Le Gall A, Michon AM, Mitchell DJ, Prinjha RK, Roberts AD, Sheppard RJ, Watson RJ, ACS Med Chem Lett. 2014 Sep 10;5(11):1190-1195. eCollection 2014 Nov 13. PMID:25408830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4uye.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4uye.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4UYE
  • CSU: Contacts of Structural Units for 4UYE
  • Structure Factors (611 Kb)
  • Retrieve 4UYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UYE from S2C, [Save to disk]
  • Re-refined 4uye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UYE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UYE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uye_B] [4uye] [4uye_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UYE: [BROMO ] by SMART
    • Other resources with information on 4UYE
  • Community annotation for 4UYE at PDBWiki (http://pdbwiki.org)

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