OCA Atlas for 4UYO

4UYO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

79M, 79N, FLC, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, F, D, C, A, B

Primary reference

Ternary structure reveals mechanism of a membrane diacylglycerol kinase., Li D, Stansfeld PJ, Sansom MS, Keogh A, Vogeley L, Howe N, Lyons JA, Aragao D, Fromme P, Fromme R, Basu S, Grotjohann I, Kupitz C, Rendek K, Weierstall U, Zatsepin NA, Cherezov V, Liu W, Bandaru S, English NJ, Gati C, Barty A, Yefanov O, Chapman HN, Diederichs K, Messerschmidt M, Boutet S, Williams GJ, Marvin Seibert M, Caffrey M, Nat Commun. 2015 Dec 17;6:10140. doi: 10.1038/ncomms10140. PMID:26673816

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]

Biological Unit Coordinates (4uyo.pdb1.gz) 54 Kb

Biological Unit Coordinates (4uyo.pdb2.gz) 54 Kb

LPC: Ligand-Protein Contacts for 4UYO

CSU: Contacts of Structural Units for 4UYO

Structure Factors (442 Kb)

Retrieve 4UYO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4UYO from S2C, [Save to disk]

Re-refined 4uyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4UYO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4uyo] [4uyo_A] [4uyo_B] [4uyo_C] [4uyo_D] [4uyo_E] [4uyo_F]

SWISS-PROT database:

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