4V06 Oxidoreductase date Sep 11, 2014
title Crystal Structure Of Human Tryptophan Hydroxylase 2 (Tph2), Domain
authors J.Kopec, A.Oberholzer, F.Fitzpatrick, J.Newman, C.Tallant, W.Kiya L.Shrestha, N.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwar C.Bountra, W.W.Yue
compound source
Molecule: Tryptophan 5-Hydroxylase 2
Chain: A, B
Fragment: Catalytic Domain, Residues 148-490
Synonym: Neuronal Tryptophan Hydroxylase, Tryptophan 5-Mono 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_plasmid: Pnic28-Bsa
symmetry Space Group: P 21 21 2
R_factor 0.198 R_Free 0.242
length a length b length c angle alpha angle beta angle gamma
95.960 100.199 89.009 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.63 Å
ligand FE, IMD enzyme Oxidoreductase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (4v06.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (4v06.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 4V06
  • CSU: Contacts of Structural Units for 4V06
  • Structure Factors (283 Kb)
  • Retrieve 4V06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V06 from S2C, [Save to disk]
  • Re-refined 4v06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4V06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V06
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4V06, from MSDmotif at EBI
  • Fold representative 4v06 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v06_A] [4v06_B] [4v06]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V06
  • Community annotation for 4V06 at PDBWiki (http://pdbwiki.org)

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