4V0P Immune System date Sep 17, 2014
title Crystal Structure Of The Mage Homology Domain Of Human Mage-
authors J.A.Newman, H.Aitkenhead, C.D.O.Cooper, D.M.Pinkas, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi
compound source
Molecule: Melanoma-Associated Antigen 3
Chain: A
Fragment: Mage Homology Domain, Residues 104-314
Synonym: Antigen Mz2-D, Cancertestis Antigen 1.3, Ct1.3, M Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
symmetry Space Group: P 61 2 2
R_factor 0.2002 R_Free 0.2381
length a length b length c angle alpha angle beta angle gamma
61.473 61.473 292.831 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4v0p.pdb1.gz) 144 Kb
  • CSU: Contacts of Structural Units for 4V0P
  • Structure Factors (1048 Kb)
  • Retrieve 4V0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V0P from S2C, [Save to disk]
  • Re-refined 4v0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4V0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4V0P, from MSDmotif at EBI
  • Fold representative 4v0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v0p] [4v0p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4V0P: [MAGE ] by SMART
  • Other resources with information on 4V0P
  • Community annotation for 4V0P at PDBWiki (http://pdbwiki.org)

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