4V2V JMJD2A COMPLEXED WITH NI(II), NOG AND HISTONE H3K27me3 PEPTIDE (25-29) ARK(me3)SA date
authors Chowdhury, R., Madden, S.K., Schofield, C.J.
compound source
symmetry
R_factor
R_Free 0.2208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CL, M3L, NI, OGA, ZN enzyme
Primary referenceStudies on the catalytic domains of multiple JmjC oxygenases using peptide substrates., Williams ST, Walport LJ, Hopkinson RJ, Madden SK, Chowdhury R, Schofield CJ, Kawamura A, Epigenetics. 2014 Dec 2;9(12):1596-603. doi: 10.4161/15592294.2014.983381. PMID:25625844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (4v2v.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (4v2v.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4V2V
  • CSU: Contacts of Structural Units for 4V2V
  • Structure Factors (3249 Kb)
  • Retrieve 4V2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V2V from S2C, [Save to disk]
  • Re-refined 4v2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4V2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V2V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V2V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v2v_B] [4v2v_D] [4v2v] [4v2v_C] [4v2v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V2V: [JmjC] [JmjN ] by SMART
    • Other resources with information on 4V2V
  • Community annotation for 4V2V at PDBWiki (http://pdbwiki.org)

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