4W5O The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 date
authors Schirle, N.T., MacRae, I.J.
compound source
symmetry
R_factor
R_Free 0.1965
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand IPA, IPH, MG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • core promoter sequence-speci...
  • translation initiation facto...
  • endoribonuclease activity
  • endoribonuclease activity, p...
  • siRNA binding
  • endoribonuclease activity, c...


    • Primary referenceGene regulation. Structural basis for microRNA targeting., Schirle NT, Sheu-Gruttadauria J, MacRae IJ, Science. 2014 Oct 31;346(6209):608-13. doi: 10.1126/science.1258040. PMID:25359968
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (4w5o.pdb1.gz) 296 Kb
  • LPC: Ligand-Protein Contacts for 4W5O
  • CSU: Contacts of Structural Units for 4W5O
  • Structure Factors (4628 Kb)
  • Retrieve 4W5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W5O from S2C, [Save to disk]
  • Re-refined 4w5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4W5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4W5O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4W5O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w5o] [4w5o_D] [4w5o_B] [4w5o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4W5O: [DUF1785] [PAZ] [Piwi ] by SMART
    • Other resources with information on 4W5O
  • Community annotation for 4W5O at PDBWiki (http://pdbwiki.org)

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