4W9W Transferase date Aug 28, 2014
title Crystal Structure Of Bmp-2-Inducible Kinase In Complex With Molecule Azd-7762
authors F.J.Sorrell, J.M.Elkins, T.Krojer, P.Savitsky, E.Williams, F.Von C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Structural Gen Consortium (Sgc)
compound source
Molecule: Bmp-2-Inducible Protein Kinase
Chain: A
Fragment: Kinase Domain, Unp Residues 39-344
Synonym: Bike
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Other_details: Surface Entropy Mutant Of Bmp2k Kinase Domai K321a)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2k, Bike, Hrihfb2017
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Zb
symmetry Space Group: I 2 2 2
R_factor 0.166 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.220 112.730 163.049 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand EDO, YDJ enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFamily-wide Structural Analysis of Human Numb-Associated Protein Kinases., Sorrell FJ, Szklarz M, Abdul Azeez KR, Elkins JM, Knapp S, Structure. 2016 Jan 29. pii: S0969-2126(16)00008-3. doi:, 10.1016/j.str.2015.12.015. PMID:26853940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4w9w.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4W9W
  • CSU: Contacts of Structural Units for 4W9W
  • Structure Factors (424 Kb)
  • Retrieve 4W9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W9W from S2C, [Save to disk]
  • Re-refined 4w9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4W9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4W9W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4W9W, from MSDmotif at EBI
  • Fold representative 4w9w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w9w_A] [4w9w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4W9W: [STYKc ] by SMART
  • Other resources with information on 4W9W
  • Community annotation for 4W9W at PDBWiki (http://pdbwiki.org)

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