4WAG Phosphatidylinositol 4-kinase III beta crystallized with MI103 inhibitor date
authors Chalupska, D., Boura, E.
compound source
symmetry
R_factor
R_Free 0.2505
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.41
ligand 3K7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHighly Selective Phosphatidylinositol 4-Kinase IIIbeta Inhibitors and Structural Insight into Their Mode of Action., Mejdrova I, Chalupska D, Kogler M, Sala M, Plackova P, Baumlova A, Hrebabecky H, Prochazkova E, Dejmek M, Guillon R, Strunin D, Weber J, Lee G, Birkus G, Mertlikova-Kaiserova H, Boura E, Nencka R, J Med Chem. 2015 May 14;58(9):3767-93. doi: 10.1021/acs.jmedchem.5b00499. Epub, 2015 May 4. PMID:25897704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4wag.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 4WAG
  • CSU: Contacts of Structural Units for 4WAG
  • Structure Factors (72 Kb)
  • Retrieve 4WAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WAG from S2C, [Save to disk]
  • Re-refined 4wag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WAG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WAG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wag_A] [4wag]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WAG: [PI3Kc ] by SMART
  • Other resources with information on 4WAG
  • Community annotation for 4WAG at PDBWiki (http://pdbwiki.org)

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