4WCE The crystal structure of the large ribosomal subunit of Staphylococcus aureus date
authors Eyal, Z., Matzov, D., Krupkin, M., Wekselman, I., Zimmerman, E., Rozenberg, H., Bashan, A., Yonath, A.
compound source
symmetry
R_factor
R_Free 0.2465
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.53
ligand EOH, EPE, MG, MN, MPD, SPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
2


3


4


A


B


C


D


E


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Primary referenceStructural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus., Eyal Z, Matzov D, Krupkin M, Wekselman I, Paukner S, Zimmerman E, Rozenberg H, Bashan A, Yonath A, Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5805-14. doi:, 10.1073/pnas.1517952112. Epub 2015 Oct 13. PMID:26464510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3257 Kb) [Save to disk]
  • Biological Unit Coordinates (4wce.pdb1.gz) 3229 Kb
  • LPC: Ligand-Protein Contacts for 4WCE
  • CSU: Contacts of Structural Units for 4WCE
  • Structure Factors (4143 Kb)
  • Retrieve 4WCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WCE from S2C, [Save to disk]
  • Re-refined 4wce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WCE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wce_O] [4wce_Y] [4wce_J] [4wce_E] [4wce_S] [4wce_C] [4wce_M] [4wce_K] [4wce_D] [4wce_P] [4wce_V] [4wce] [4wce_G] [4wce_W] [4wce_H] [4wce_R] [4wce_2] [4wce_A] [4wce_U] [4wce_L] [4wce_4] [4wce_N] [4wce_T] [4wce_3] [4wce_B] [4wce_Z] [4wce_I] [4wce_X] [4wce_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WCE: [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 4WCE
  • Community annotation for 4WCE at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science