4WCE Ribosome date Sep 04, 2014
title The Crystal Structure Of The Large Ribosomal Subunit Of Stap Aureus
authors Z.Eyal, D.Matzov, M.Krupkin, I.Wekselman, E.Zimmerman, H.Rozenber A.Bashan, A.Yonath
compound source
Molecule: 23s Rrna
Chain: X
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 5s Rrna
Chain: Y

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L2
Chain: A

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L3
Chain: B

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L4
Chain: C

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L5
Chain: D

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L6
Chain: E

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L13
Chain: G

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L14
Chain: H

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L15
Chain: I

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L16
Chain: J

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L17
Chain: K

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L18
Chain: L

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L19
Chain: M

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L20
Chain: N

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L21
Chain: O

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L22
Chain: P

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L23
Chain: Q

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L24
Chain: R

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L25
Chain: S
Synonym: General Stress Protein Ctc

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L27
Chain: T

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L28
Chain: U

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L29
Chain: V

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L30
Chain: W

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L32
Chain: Z

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L34
Chain: 2

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L35
Chain: 3

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325

Molecule: 50s Ribosomal Protein L36
Chain: 4

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93061
Strain: Nctc 8325
symmetry Space Group: P 65 2 2
R_factor 0.202 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
279.756 279.756 872.725 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.53 Å
ligand EOH, EPE, MG, MN, MPD, SPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
2


3


4


A


B


C


D


E


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3333 Kb) [Save to disk]
  • Biological Unit Coordinates (4wce.pdb1.gz) 3303 Kb
  • LPC: Ligand-Protein Contacts for 4WCE
  • CSU: Contacts of Structural Units for 4WCE
  • Structure Factors (4143 Kb)
  • Retrieve 4WCE in mmCIF format [Save to disk]
  • Re-refined 4wce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wce_O] [4wce_Y] [4wce_J] [4wce_E] [4wce_S] [4wce_C] [4wce_M] [4wce_K] [4wce_D] [4wce_P] [4wce_V] [4wce] [4wce_G] [4wce_W] [4wce_H] [4wce_R] [4wce_2] [4wce_A] [4wce_U] [4wce_L] [4wce_4] [4wce_N] [4wce_T] [4wce_3] [4wce_B] [4wce_Z] [4wce_I] [4wce_X] [4wce_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WCE: [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 4WCE
  • Community annotation for 4WCE at PDBWiki (http://pdbwiki.org)

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