4WCG Dna Binding Protein date Sep 04, 2014
title The Binding Mode Of Cyprinid Herpesvirus3 Orf112-Zalpha To Z
authors K.Kus, A.Athanasiadis
compound source
Molecule: Orf112
Chain: A, B
Engineered: Yes
Organism_scientific: Cyprinid Herpesvirus 3
Organism_taxid: 180230
Gene: Khvj122
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Dna (5'-D(Pcpgpcpgpcpg)-3')
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32 2 1
R_factor 0.178 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.821 44.821 140.082 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Structure of the Cyprinid Herpesvirus 3 ORF112-Zalpha/Z-DNA Complex Reveals a Mechanism of Nucleic Acids Recognition Conserved with E3L, a Poxvirus Inhibitor of Interferon Response., Kus K, Rakus K, Boutier M, Tsigkri T, Gabriel L, Vanderplasschen A, Athanasiadis A, J Biol Chem. 2015 Nov 11. pii: jbc.M115.679407. PMID:26559969
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4wcg.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4WCG
  • CSU: Contacts of Structural Units for 4WCG
  • Structure Factors (456 Kb)
  • Retrieve 4WCG in mmCIF format [Save to disk]
  • Re-refined 4wcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WCG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wcg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wcg_A] [4wcg_C] [4wcg] [4wcg_D] [4wcg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WCG: [Zalpha ] by SMART
  • Other resources with information on 4WCG
  • Community annotation for 4WCG at PDBWiki (http://pdbwiki.org)

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