4WCO Crystal structure of extracellular domain of human lectin-like transcript 1 (LLT1), the ligand for natural killer receptor-P1A date
authors Kita, S., Matsubara, H., Kasai, Y., Tamaoki, T., Okabe, Y., Fukuhara, H., Kamishikiryo, J., Ose, T., Kuroki, K., Maenaka, K.
compound source
symmetry
R_factor
R_Free 0.2572
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.46
ligand ACT, SO4, ZN enzyme
Primary referenceCrystal structure of extracellular domain of human lectin-like transcript 1 (LLT1), the ligand for natural killer receptor-P1A., Kita S, Matsubara H, Kasai Y, Tamaoki T, Okabe Y, Fukuhara H, Kamishikiryo J, Krayukhina E, Uchiyama S, Ose T, Kuroki K, Maenaka K, Eur J Immunol. 2015 Jun;45(6):1605-13. doi: 10.1002/eji.201545509. Epub 2015 Apr , 28. PMID:25826155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4wco.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (4wco.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (4wco.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4WCO
  • CSU: Contacts of Structural Units for 4WCO
  • Structure Factors (199 Kb)
  • Retrieve 4WCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WCO from S2C, [Save to disk]
  • Re-refined 4wco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WCO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wco_A] [4wco] [4wco_C] [4wco_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WCO: [CLECT ] by SMART
    • Other resources with information on 4WCO
  • Community annotation for 4WCO at PDBWiki (http://pdbwiki.org)

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