4WDI Weak TCR binding to an unstable insulin epitope drives type 1 diabetes date
authors Rizkallah, P.J., Cole, D.K.
compound source
symmetry
R_factor
R_Free 0.2834
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.31
ligand EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

    • Primary referenceDistortion of the MHC class I binding groove to accommodate an insulin-derived 10-mer peptide., Motozono C, Pearson JA, De Leenheer E, Rizkallah PJ, Beck K, Trimby A, Sewell AK, Wong FS, Cole DK, J Biol Chem. 2015 Jun 17. pii: jbc.M114.622522. PMID:26085090
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (4wdi.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (4wdi.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4WDI
  • CSU: Contacts of Structural Units for 4WDI
  • Structure Factors (1565 Kb)
  • Retrieve 4WDI in mmCIF format [Save to disk]
  • Re-refined 4wdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WDI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wdi_A] [4wdi] [4wdi_E] [4wdi_B] [4wdi_F] [4wdi_D] [4wdi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WDI: [IGc1 ] by SMART
    • Other resources with information on 4WDI
  • Community annotation for 4WDI at PDBWiki (http://pdbwiki.org)

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