4WFN Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin date
authors Wekselman, I., Zimmerman, E., Rozenberg, H., Bashan, A., Yonath, A.
compound source
symmetry
R_factor
R_Free 0.2823
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.54
ligand ERY, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
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A


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C


D


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R


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Primary referenceThe Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel., Wekselman I, Zimmerman E, Davidovich C, Belousoff M, Matzov D, Krupkin M, Rozenberg H, Bashan A, Friedlander G, Kjeldgaard J, Ingmer H, Lindahl L, Zengel JM, Yonath A, Structure. 2017 Aug 1;25(8):1233-1241.e3. doi: 10.1016/j.str.2017.06.004. Epub, 2017 Jul 6. PMID:28689968
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3465 Kb) [Save to disk]
  • Biological Unit Coordinates (4wfn.pdb1.gz) 3451 Kb
  • LPC: Ligand-Protein Contacts for 4WFN
  • CSU: Contacts of Structural Units for 4WFN
  • Structure Factors (4559 Kb)
  • Retrieve 4WFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WFN from S2C, [Save to disk]
  • Re-refined 4wfn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WFN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wfn_E] [4wfn_T] [4wfn_V] [4wfn_I] [4wfn_P] [4wfn_B] [4wfn_1] [4wfn_H] [4wfn_N] [4wfn_U] [4wfn_L] [4wfn_G] [4wfn_A] [4wfn_Y] [4wfn_Z] [4wfn_J] [4wfn_R] [4wfn_M] [4wfn_S] [4wfn_C] [4wfn_D] [4wfn_O] [4wfn] [4wfn_X] [4wfn_K] [4wfn_W] [4wfn_3] [4wfn_2] [4wfn_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WFN: [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 4WFN
  • Community annotation for 4WFN at PDBWiki (http://pdbwiki.org)

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