4WJO Protein Binding Signaling Protein date Oct 01, 2014
title Crystal Structure Of Sumo1 In Complex With Pml
authors L.Cappadocia, X.H.Mascle, V.Bourdeau, S.Tremblay-Belzile, M.Chak Margot, M.Lussier-Price, J.Wada, K.Sakaguchi, M.Aubry, G.Ferbeyr J.G.Omichinski
compound source
Molecule: Small Ubiquitin-Related Modifier 1
Chain: A
Fragment: Sumo1, Unp Residues 17-97
Synonym: Sumo-1,Gap-Modifying Protein 1,Gmp1,Smt3 Homolog 3 Ubiquitin-Homology Domain Protein Pic1,Ubiquitin-Like Prote Smt3c,Ubiquitin-Like Protein Ubl1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sumo1, Smt3c, Smt3h3, Ubl1, Oksw-Cl.43
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex2t

Molecule: Protein Pml
Chain: B
Fragment: Pml, Unp Residues 547-573
Synonym: Promyelocytic Leukemia Protein,Ring Finger Protein Tripartite Motif-Containing Protein 19;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pml, Myl, Pp8675, Rnf71, Trim19
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex2t
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.388 47.253 63.908 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.46 Å
Primary referenceStructural and Functional Characterization of the Phosphorylation-Dependent Interaction between PML and SUMO1., Cappadocia L, Mascle XH, Bourdeau V, Tremblay-Belzile S, Chaker-Margot M, Lussier-Price M, Wada J, Sakaguchi K, Aubry M, Ferbeyre G, Omichinski JG, Structure. 2014 Dec 11. pii: S0969-2126(14)00360-8. doi:, 10.1016/j.str.2014.10.015. PMID:25497731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4wjo.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 4WJO
  • Structure Factors (228 Kb)
  • Retrieve 4WJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WJO from S2C, [Save to disk]
  • Re-refined 4wjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WJO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WJO, from MSDmotif at EBI
  • Fold representative 4wjo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wjo_B] [4wjo] [4wjo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WJO: [UBQ ] by SMART
  • Other resources with information on 4WJO
  • Community annotation for 4WJO at PDBWiki (http://pdbwiki.org)

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