4WJO	Protein Binding Signaling Protein	date	Oct 01, 2014
title	Crystal Structure Of Sumo1 In Complex With Pml
authors	L.Cappadocia, X.H.Mascle, V.Bourdeau, S.Tremblay-Belzile, M.Chak Margot, M.Lussier-Price, J.Wada, K.Sakaguchi, M.Aubry, G.Ferbeyr J.G.Omichinski
compound		source
Molecule: Small Ubiquitin-Related Modifier 1 Chain: A Fragment: Sumo1, Unp Residues 17-97 Synonym: Sumo-1,Gap-Modifying Protein 1,Gmp1,Smt3 Homolog 3 Ubiquitin-Homology Domain Protein Pic1,Ubiquitin-Like Prote Smt3c,Ubiquitin-Like Protein Ubl1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sumo1, Smt3c, Smt3h3, Ubl1, Oksw-Cl.43 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Topp2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex2t
Molecule: Protein Pml Chain: B Fragment: Pml, Unp Residues 547-573 Synonym: Promyelocytic Leukemia Protein,Ring Finger Protein Tripartite Motif-Containing Protein 19; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pml, Myl, Pp8675, Rnf71, Trim19 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Topp2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex2t
symmetry	Space Group: P 21 21 21	R_factor 0.157 R_Free 0.184
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.388 47.253 63.908 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.46 Å
Primary reference	Structural and Functional Characterization of the Phosphorylation-Dependent Interaction between PML and SUMO1., Cappadocia L, Mascle XH, Bourdeau V, Tremblay-Belzile S, Chaker-Margot M, Lussier-Price M, Wada J, Sakaguchi K, Aubry M, Ferbeyre G, Omichinski JG, Structure. 2014 Dec 11. pii: S0969-2126(14)00360-8. doi:, 10.1016/j.str.2014.10.015. PMID:25497731

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (4wjo.pdb1.gz) 49 Kb CSU: Contacts of Structural Units for 4WJO Structure Factors (228 Kb) Retrieve 4WJO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4WJO from S2C, [Save to disk] Re-refined 4wjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4WJO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4WJO

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4WJO, from MSDmotif at EBI Fold representative 4wjo from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4wjo_B] [4wjo] [4wjo_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4WJO: [UBQ ] by SMART

Other resources with information on 4WJO

Community annotation for 4WJO at PDBWiki (http://pdbwiki.org)

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