4WK7 Crystal structure of human ADAMTS-4 in complex with inhibitor (compound 1, 2-(4-chlorophenoxy)-N-{[(4R)-4-methyl-2,5-dioxoimidazolidin-4-yl]methyl} acetamide) date
authors Durbin, J.D., Stout, S.L.
compound source
symmetry
R_factor
R_Free 0.2132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.24
ligand 3PQ, CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Potent and Selective Hydantoin Inhibitors of Aggrecanase-1 and Aggrecanase-2 That Are Efficacious in Both Chemical and Surgical Models of Osteoarthritis., Durham TB, Klimkowski VJ, Rito CJ, Marimuthu J, Toth JL, Liu C, Durbin JD, Stout SL, Adams L, Swearingen C, Lin C, Chambers MG, Thirunavukkarasu K, Wiley MR, J Med Chem. 2014 Dec 5. PMID:25415648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4wk7.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4WK7
  • CSU: Contacts of Structural Units for 4WK7
  • Structure Factors (3083 Kb)
  • Retrieve 4WK7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WK7 from S2C, [Save to disk]
  • Re-refined 4wk7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WK7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WK7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WK7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wk7] [4wk7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WK7
  • Community annotation for 4WK7 at PDBWiki (http://pdbwiki.org)

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