OCA Atlas for 4WK8

4WK8

FOXP3 forms a domain-swapped dimer to bridge DNA

date

authors

Chen, Y., Chen, L.

compound

source

symmetry

R_factor

R_Free

0.2525

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

3.40

Gene
Ontology

Chain	Function	Process	Component
F, G

Primary reference

DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions., Chen Y, Chen C, Zhang Z, Liu CC, Johnson ME, Espinoza CA, Edsall LE, Ren B, Zhou XJ, Grant SF, Wells AD, Chen L, Nucleic Acids Res. 2015 Jan 7. pii: gku1373. PMID:25567984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]

Biological Unit Coordinates (4wk8.pdb1.gz) 92 Kb

CSU: Contacts of Structural Units for 4WK8

Structure Factors (102 Kb)

Retrieve 4WK8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4WK8 from S2C, [Save to disk]

Re-refined 4wk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4WK8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4WK8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4WK8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4wk8_G] [4wk8_B] [4wk8_A] [4wk8] [4wk8_F]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domain found in 4WK8: [FH ] by SMART

Other resources with information on 4WK8

Community annotation for 4WK8 at PDBWiki (http://pdbwiki.org)

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