4WKE Crystal structure of human ADAMTS-4 in complex with inhibitor 5-chloro-N-{[(4R)-2,5-dioxo-4-(1,3-thiazol-2-yl)imidazolidin-4-yl]methyl}-1-benzofuran-2-carboxamide (compound 10) date
authors Durbin, J.D.
compound source
symmetry
R_factor
R_Free 0.2087
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.62
ligand 3PU, CA, EDO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Potent and Selective Hydantoin Inhibitors of Aggrecanase-1 and Aggrecanase-2 That Are Efficacious in Both Chemical and Surgical Models of Osteoarthritis., Durham TB, Klimkowski VJ, Rito CJ, Marimuthu J, Toth JL, Liu C, Durbin JD, Stout SL, Adams L, Swearingen C, Lin C, Chambers MG, Thirunavukkarasu K, Wiley MR, J Med Chem. 2014 Dec 5. PMID:25415648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4wke.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4WKE
  • CSU: Contacts of Structural Units for 4WKE
  • Structure Factors (1495 Kb)
  • Retrieve 4WKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WKE from S2C, [Save to disk]
  • Re-refined 4wke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WKE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WKE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wke_A] [4wke]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WKE
  • Community annotation for 4WKE at PDBWiki (http://pdbwiki.org)

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