4WLO Oxidoreductase date Oct 07, 2014
title Crystal Structure Of Oxaloacetate And Nadh Bound Mdh2
authors Y.M.Eo, B.G.Han, H.C.Ahn
compound source
Molecule: Malate Dehydrogenase, Mitochondrial
Chain: A, B, C, D
Ec: 1.1.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.989 152.191 155.869 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAI, OAA enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (4wlo.pdb1.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 4WLO
  • CSU: Contacts of Structural Units for 4WLO
  • Structure Factors (909 Kb)
  • Retrieve 4WLO in mmCIF format [Save to disk]
  • Re-refined 4wlo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WLO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wlo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wlo_C] [4wlo_B] [4wlo_A] [4wlo] [4wlo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WLO
  • Community annotation for 4WLO at PDBWiki (http://pdbwiki.org)

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