4WNG Signaling Protein Protein Binding date Oct 11, 2014
title Crystal Structure Of The Tpr Domain Of Lgn In Complex With Frmpd4preso1 At 2.1 Angstrom Resolution
authors H.Takayanagi, S.Yuzawa, H.Sumimoto
compound source
Molecule: G-Protein-Signaling Modulator 2
Chain: A
Fragment: N-Terminal Tpr Domain, Unp Residues 20-421
Synonym: Mosaic Protein Lgn
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpsm2, Lgn
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2

Molecule: Ferm And Pdz Domain-Containing Protein 4
Chain: B
Fragment: Frmpd4-L, Unp Residues 978-1025
Synonym: Pdz Domain-Containing Protein 10,Psd-95-Interactin Regulator Of Spine Morphogenesis,Preso;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Frmpd4, Kiaa0316, Pdzd10, Pdzk10
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet-1
symmetry Space Group: P 61 2 2
R_factor 0.224 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.527 90.527 177.067 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.11 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4wng.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 4WNG
  • Structure Factors (382 Kb)
  • Retrieve 4WNG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WNG from S2C, [Save to disk]
  • Re-refined 4wng structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WNG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wng from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wng] [4wng_B] [4wng_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WNG: [TPR ] by SMART
  • Other resources with information on 4WNG
  • Community annotation for 4WNG at PDBWiki (http://pdbwiki.org)

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