4WO1 Signaling Protein date Oct 15, 2014
title Crystal Structure Of The Dap12 Transmembrane Domain In Lipid Phase
authors M.J.Call, M.E.Call, K.Knoblich
compound source
Molecule: Tyro Protein Tyrosine Kinase-Binding Protein
Chain: A, B, C, D
Fragment: Unp Residues 35-67
Synonym: Dnax-Activation Protein 12,Killer-Activating Recep Associated Protein,Kar-Associated Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyrobp, Dap12, Karap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.232 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.797 43.685 50.605 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand CA, OLC enzyme
Primary referenceTransmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights into Control of Oligomerization in Immunoreceptor Assembly., Knoblich K, Park S, Lutfi M, van 't Hag L, Conn CE, Seabrook SA, Newman J, Czabotar PE, Im W, Call ME, Call MJ, Cell Rep. 2015 May 26;11(8):1184-92. doi: 10.1016/j.celrep.2015.04.045. Epub 2015, May 14. PMID:25981043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4wo1.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (4wo1.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4WO1
  • CSU: Contacts of Structural Units for 4WO1
  • Structure Factors (107 Kb)
  • Retrieve 4WO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WO1 from S2C, [Save to disk]
  • Re-refined 4wo1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WO1, from MSDmotif at EBI
  • Fold representative 4wo1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wo1_B] [4wo1_D] [4wo1_A] [4wo1] [4wo1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WO1
  • Community annotation for 4WO1 at PDBWiki (http://pdbwiki.org)

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