4WOL Signaling Protein date Oct 16, 2014
title Crystal Structure Of The Dap12 Transmembrane Domain In Lipid Phase
authors M.J.Call, M.E.Call, K.Knoblich
compound source
Molecule: Tyro Protein Tyrosine Kinase-Binding Protein
Chain: A, B, C
Fragment: Unp Residues 35-67
Synonym: Dnax-Activation Protein 12,Killer-Activating Recep Associated Protein,Kar-Associated Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyrobp, Dap12, Karap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
20.775 35.709 101.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand K, OLC enzyme
Primary referenceTransmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights into Control of Oligomerization in Immunoreceptor Assembly., Knoblich K, Park S, Lutfi M, van 't Hag L, Conn CE, Seabrook SA, Newman J, Czabotar PE, Im W, Call ME, Call MJ, Cell Rep. 2015 May 26;11(8):1184-92. doi: 10.1016/j.celrep.2015.04.045. Epub 2015, May 14. PMID:25981043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4wol.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 4WOL
  • CSU: Contacts of Structural Units for 4WOL
  • Structure Factors (114 Kb)
  • Retrieve 4WOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WOL from S2C, [Save to disk]
  • Re-refined 4wol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WOL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WOL, from MSDmotif at EBI
  • Fold representative 4wol from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wol_A] [4wol] [4wol_B] [4wol_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WOL
  • Community annotation for 4WOL at PDBWiki (http://pdbwiki.org)

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