4WQT Thermus thermophilus RNA polymerase complexed with an RNA cleavage stimulating factor (a GreA/Gfh1 chimeric protein) date
authors Murayama, Y., Sekine, S., Yokoyama, S.
compound source
symmetry
R_factor
R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.40
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, J, O


F, K, L, A, B, G


M, C, H


N, D, I


Y, Z, X


Primary referenceThe ratcheted and ratchetable structural States of RNA polymerase underlie multiple transcriptional functions., Sekine S, Murayama Y, Svetlov V, Nudler E, Yokoyama S, Mol Cell. 2015 Feb 5;57(3):408-21. doi: 10.1016/j.molcel.2014.12.014. Epub 2015, Jan 15. PMID:25601758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1361 Kb) [Save to disk]
  • Biological Unit Coordinates (4wqt.pdb1.gz) 463 Kb
  • Biological Unit Coordinates (4wqt.pdb2.gz) 460 Kb
  • Biological Unit Coordinates (4wqt.pdb3.gz) 463 Kb
  • LPC: Ligand-Protein Contacts for 4WQT
  • CSU: Contacts of Structural Units for 4WQT
  • Structure Factors (1753 Kb)
  • Retrieve 4WQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WQT from S2C, [Save to disk]
  • Re-refined 4wqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WQT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WQT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wqt_X] [4wqt_A] [4wqt] [4wqt_L] [4wqt_E] [4wqt_Y] [4wqt_Z] [4wqt_M] [4wqt_J] [4wqt_D] [4wqt_C] [4wqt_F] [4wqt_G] [4wqt_B] [4wqt_K] [4wqt_I] [4wqt_N] [4wqt_O] [4wqt_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WQT: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 4WQT
  • Community annotation for 4WQT at PDBWiki (http://pdbwiki.org)

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