4WTK Transferase Rna date Oct 30, 2014
title Crystal Structure Of Hcv Ns5b Genotype 2a Jfh-1 Isolate With E87q C223h V321i Mutations In Complex With Rna Template 5'- Primer 5'-Pgg, Mn2+, And Cdp
authors T.E.Edwards, T.C.Appleby
compound source
Molecule: Rna Template Agcc
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna Primer Gg
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna-Directed Rna Polymerase
Chain: A
Ec: 2.7.7.48
Engineered: Yes
Mutation: Yes

Organism_scientific: Hepatitis C Virus Jfh-1
Organism_taxid: 356411
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.184 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.230 140.230 92.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand B3P, CDP, CL, EDO, MN, PG6 enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceViral replication. Structural basis for RNA replication by the hepatitis C virus polymerase., Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D 3rd, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE, Science. 2015 Feb 13;347(6223):771-5. doi: 10.1126/science.1259210. PMID:25678663
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4wtk.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4WTK
  • CSU: Contacts of Structural Units for 4WTK
  • Structure Factors (665 Kb)
  • Retrieve 4WTK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WTK from S2C, [Save to disk]
  • Re-refined 4wtk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WTK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WTK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WTK, from MSDmotif at EBI
  • Fold representative 4wtk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wtk] [4wtk_A] [4wtk_T] [4wtk_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WTK
  • Community annotation for 4WTK at PDBWiki (http://pdbwiki.org)

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