4WU8 Structure of trPtNAP-NCP145 date
authors Chua, E.Y.D., Davey, C.A.
compound source
symmetry
R_factor
R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand CX3, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceStereochemical control of nucleosome targeting by platinum-intercalator antitumor agents., Chua EY, Davey GE, Chin CF, Droge P, Ang WH, Davey CA, Nucleic Acids Res. 2015 Jun 23;43(11):5284-96. doi: 10.1093/nar/gkv356. Epub 2015, Apr 27. PMID:25916851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (4wu8.pdb1.gz) 240 Kb
  • LPC: Ligand-Protein Contacts for 4WU8
  • CSU: Contacts of Structural Units for 4WU8
  • Structure Factors (1410 Kb)
  • Retrieve 4WU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WU8 from S2C, [Save to disk]
  • Re-refined 4wu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WU8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wu8_G] [4wu8_E] [4wu8_D] [4wu8_B] [4wu8_C] [4wu8_H] [4wu8] [4wu8_A] [4wu8_J] [4wu8_F] [4wu8_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WU8: [H2A] [H2B] [H3] [H4 ] by SMART
    • Other resources with information on 4WU8
  • Community annotation for 4WU8 at PDBWiki (http://pdbwiki.org)

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