4WUH Crystal structure of E. faecalis DNA binding domain LiaR wild type complexed with 22bp DNA date
authors Davlieva, M., Shamoo, Y.
compound source
symmetry
R_factor
R_Free 0.2592
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.29
ligand GOL enzyme
Gene HMPREF9376
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA variable DNA recognition site organization establishes the LiaR-mediated cell envelope stress response of enterococci to daptomycin., Davlieva M, Shi Y, Leonard PG, Johnson TA, Zianni MR, Arias CA, Ladbury JE, Shamoo Y, Nucleic Acids Res. 2015 Apr 19. pii: gkv321. PMID:25897118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4wuh.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4WUH
  • CSU: Contacts of Structural Units for 4WUH
  • Structure Factors (160 Kb)
  • Retrieve 4WUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WUH from S2C, [Save to disk]
  • Re-refined 4wuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WUH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WUH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wuh_C] [4wuh] [4wuh_A] [4wuh_B] [4wuh_G] [4wuh_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WUH: [HTH_LUXR ] by SMART
    • Other resources with information on 4WUH
  • Community annotation for 4WUH at PDBWiki (http://pdbwiki.org)

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