4WW1 Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8 and Beta Chain-TRBV7-8 date
authors Nours, J.Le., Praveena, T., Pellicci, D.G., Lim, R.T., Besra, G., Howell, A.R., Godfrey, D.I., Rossjohn, J., Uldrich, A.P.
compound source
symmetry
R_factor
R_Free 0.2129
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.38
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtypical natural killer T-cell receptor recognition of CD1d-lipid antigens., Le Nours J, Praveena T, Pellicci DG, Gherardin NA, Ross FJ, Lim RT, Besra GS, Keshipeddy S, Richardson SK, Howell AR, Gras S, Godfrey DI, Rossjohn J, Uldrich AP, Nat Commun. 2016 Feb 15;7:10570. doi: 10.1038/ncomms10570. PMID:26875526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4ww1.pdb1.gz) 148 Kb
  • CSU: Contacts of Structural Units for 4WW1
  • Structure Factors (4946 Kb)
  • Retrieve 4WW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WW1 from S2C, [Save to disk]
  • Re-refined 4ww1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WW1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ww1] [4ww1_A] [4ww1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WW1: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4WW1
  • Community annotation for 4WW1 at PDBWiki (http://pdbwiki.org)

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