4WW2 Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8, Beta Chain-TRBV7-8, Antigen-presenting glycoprotein CD1d, and Beta-2-microglobulin date
authors Nours, J.Le., Praveena, T., Pellicci, D., Gherardin, N.A., Lim, R.T., Besra, G., Keshipeddy, S., Richardson, S.K., Howell, A.R., Gras, S., Godfrey, D.I., Rossjohn, J., Uldrich, A.P.
compound source
symmetry
R_factor
R_Free 0.2439
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.48
ligand JLS, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


F
  • cellular response to iron io...

    • Primary referenceAtypical natural killer T-cell receptor recognition of CD1d-lipid antigens., Le Nours J, Praveena T, Pellicci DG, Gherardin NA, Ross FJ, Lim RT, Besra GS, Keshipeddy S, Richardson SK, Howell AR, Gras S, Godfrey DI, Rossjohn J, Uldrich AP, Nat Commun. 2016 Feb 15;7:10570. doi: 10.1038/ncomms10570. PMID:26875526
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (4ww2.pdb1.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 4WW2
  • CSU: Contacts of Structural Units for 4WW2
  • Structure Factors (367 Kb)
  • Retrieve 4WW2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WW2 from S2C, [Save to disk]
  • Re-refined 4ww2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WW2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WW2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ww2_C] [4ww2_F] [4ww2] [4ww2_B] [4ww2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WW2: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4WW2
  • Community annotation for 4WW2 at PDBWiki (http://pdbwiki.org)

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