4WWK Crystal structure of human TCR Alpha Chain-TRAV12-3, Beta Chain-TRBV6-5, Antigen-presenting molecule CD1d, and Beta-2-microglobulin date
authors Nours, J.Le., Praveena, T., Pellicci, D.G., Gherardin, N.A., Lim, R.T., Besra, G., Keshipeddy, A., Richardson, S.K., Howell, A.R., Gras, S., Godfrey, D.I., Rossjohn, J., Uldrich, A.P.
compound source
symmetry
R_factor
R_Free 0.2558
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand JLS, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


D


Primary referenceAtypical natural killer T-cell receptor recognition of CD1d-lipid antigens., Le Nours J, Praveena T, Pellicci DG, Gherardin NA, Ross FJ, Lim RT, Besra GS, Keshipeddy S, Richardson SK, Howell AR, Gras S, Godfrey DI, Rossjohn J, Uldrich AP, Nat Commun. 2016 Feb 15;7:10570. doi: 10.1038/ncomms10570. PMID:26875526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (4wwk.pdb1.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 4WWK
  • CSU: Contacts of Structural Units for 4WWK
  • Structure Factors (1084 Kb)
  • Retrieve 4WWK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WWK from S2C, [Save to disk]
  • Re-refined 4wwk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WWK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WWK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wwk] [4wwk_C] [4wwk_A] [4wwk_D] [4wwk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WWK: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4WWK
  • Community annotation for 4WWK at PDBWiki (http://pdbwiki.org)

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