4WWR Transport Protein date Nov 12, 2014
title Crystal Structure Of Bag6-Ubl4a Dimerization Domain
authors J.Y.Mock, J.W.Chartron, W.M.Clemons Jr.
compound source
Molecule: Ubiquitin-Like Protein 4a
Chain: B, H, D, F
Synonym: Ubiquitin-Like Protein Gdx
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubl4a, Dxs254e, Gdx, Ubl4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet33b

Molecule: Large Proline-Rich Protein Bag6
Chain: A, G, C, E
Synonym: Bag Family Molecular Chaperone Regulator 6,Bcl2-As Athanogene 6,Bag6,Hla-B-Associated Transcript 3,Protein G3, Scythe;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bag6, Bat3, G3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet33b
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.235 56.494 75.545 90.00 96.23 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceBag6 complex contains a minimal tail-anchor-targeting module and a mock BAG domain., Mock J, Chartron JW, Zaslaver M, Xu Y, Ye Y, Clemons WM Jr, Proc Natl Acad Sci U S A. 2014 Dec 22. pii: 201402745. PMID:25535373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (4wwr.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4wwr.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (4wwr.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (4wwr.pdb4.gz) 51 Kb
  • CSU: Contacts of Structural Units for 4WWR
  • Structure Factors (1423 Kb)
  • Retrieve 4WWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WWR from S2C, [Save to disk]
  • Re-refined 4wwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WWR, from MSDmotif at EBI
  • Fold representative 4wwr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wwr_E] [4wwr_H] [4wwr_C] [4wwr_D] [4wwr_G] [4wwr_F] [4wwr_A] [4wwr] [4wwr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WWR
  • Community annotation for 4WWR at PDBWiki (http://pdbwiki.org)

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