4WYT Structural Protein date Nov 18, 2014
title Crystal Structure Of Scribble Pdz34 Tandem At 2.6 Angstroms
authors J.Q.Ren, W.Feng
compound source
Molecule: Protein Scribble Homolog
Chain: A
Fragment: Pdz3pdz4 Tandem (Unp Residues 992-1203)
Synonym: Hscrib,Protein Lap4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scrib, Crib1, Kiaa0147, Lap4, Scrb1, Vartul
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: C 2 2 21
R_factor 0.226 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.140 70.850 92.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CL enzyme
Primary referenceInterdomain interface-mediated target recognition by the Scribble PDZ34 supramodule., Ren J, Feng L, Bai Y, Pei H, Yuan Z, Feng W, Biochem J. 2015 May 15;468(1):133-44. doi: 10.1042/BJ20141473. PMID:25734361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4wyt.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4WYT
  • CSU: Contacts of Structural Units for 4WYT
  • Structure Factors (86 Kb)
  • Retrieve 4WYT in mmCIF format [Save to disk]
  • Re-refined 4wyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WYT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wyt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wyt] [4wyt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WYT: [PDZ ] by SMART
  • Other resources with information on 4WYT
  • Community annotation for 4WYT at PDBWiki (http://pdbwiki.org)

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