4X0Q Transferase Dna date Nov 22, 2014
title Ternary Complex Of Human Dna Polymerase Theta C-Terminal Dom Binding Ddgtp Opposite Dcmp
authors K.E.Zahn, S.Doublie
compound source
Molecule: Dna Polymerase Theta
Chain: A, B
Fragment: Unp Residues 1815-2590
Synonym: Dna Polymerase Eta
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polq, Polh
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psumo3

Molecule: Dna (5'-D(Cpgptpcpcpapaptpgpapcpapg)
Chain: E, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcptpgptpcpaptptpg)-3')
Chain: F, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 2 21
R_factor 0.258 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.704 135.392 159.819 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand DG3, GOL, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman DNA polymerase theta grasps the primer terminus to mediate DNA repair., Zahn KE, Averill AM, Aller P, Wood RD, Doublie S, Nat Struct Mol Biol. 2015 Mar 16. doi: 10.1038/nsmb.2993. PMID:25775267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • Biological Unit Coordinates (4x0q.pdb1.gz) 242 Kb
  • Biological Unit Coordinates (4x0q.pdb2.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 4X0Q
  • CSU: Contacts of Structural Units for 4X0Q
  • Structure Factors (199 Kb)
  • Retrieve 4X0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X0Q from S2C, [Save to disk]
  • Re-refined 4x0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X0Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4X0Q, from MSDmotif at EBI
  • Fold representative 4x0q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x0q_A] [4x0q_F] [4x0q_G] [4x0q_B] [4x0q_H] [4x0q_E] [4x0q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X0Q: [POLAc ] by SMART
  • Other resources with information on 4X0Q
  • Community annotation for 4X0Q at PDBWiki (http://pdbwiki.org)

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