4X0Q Ternary complex of human DNA polymerase theta C-terminal domain binding ddGTP opposite dCMP date
authors Zahn, K.E., Doublie, S.
compound source
symmetry
R_factor
R_Free 0.3163
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.90
ligand DG3, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman DNA polymerase theta grasps the primer terminus to mediate DNA repair., Zahn KE, Averill AM, Aller P, Wood RD, Doublie S, Nat Struct Mol Biol. 2015 Mar 16. doi: 10.1038/nsmb.2993. PMID:25775267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (481 Kb) [Save to disk]
  • Biological Unit Coordinates (4x0q.pdb1.gz) 237 Kb
  • Biological Unit Coordinates (4x0q.pdb2.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 4X0Q
  • CSU: Contacts of Structural Units for 4X0Q
  • Structure Factors (199 Kb)
  • Retrieve 4X0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X0Q from S2C, [Save to disk]
  • Re-refined 4x0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X0Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X0Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x0q_A] [4x0q_F] [4x0q_G] [4x0q_B] [4x0q_H] [4x0q_E] [4x0q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X0Q: [POLAc ] by SMART
    • Other resources with information on 4X0Q
  • Community annotation for 4X0Q at PDBWiki (http://pdbwiki.org)

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